Index

A

assign() (in module pbxplore.assignment) Atom (class in pbxplore.structure.structure)

AtomError

C

Chain (class in pbxplore.structure.structure) ChainError chains_from_files() (in module pbxplore.structure) chains_from_trajectory() (in module pbxplore.structure) compare() (in module pbxplore.analysis)

compute_freq_matrix() (in module pbxplore.analysis) compute_neq() (in module pbxplore.analysis) compute_score_by_position() (in module pbxplore.analysis) count_matrix() (in module pbxplore.analysis)

G

generate_weblogo() (in module pbxplore.analysis)

I

InvalidBlockError

L

load_substitution_matrix() (in module pbxplore.PB)

P

pbxplore (module) pbxplore.analysis (module) pbxplore.assign() (in module pbxplore) pbxplore.assignment (module) pbxplore.chains_from_files() (in module pbxplore) pbxplore.chains_from_trajectory() (in module pbxplore)

pbxplore.io (module) pbxplore.PB (module) pbxplore.structure (module) PDB (class in pbxplore.structure.PDB) plot_map() (in module pbxplore.analysis) plot_neq() (in module pbxplore.analysis)

R

read_fasta() (in module pbxplore.io) read_occurence_file() (in module pbxplore.analysis)

read_several_fasta() (in module pbxplore.io)

S

SizeError

substitution_score() (in module pbxplore.analysis)

W

write_count_matrix() (in module pbxplore.io) write_fasta() (in module pbxplore.io) write_flat() (in module pbxplore.io)

write_neq() (in module pbxplore.io) write_phipsi() (in module pbxplore.io)