Protein structure manipulation — pbxplore.structure

Constants

  • PDB_EXTENSIONS

    list of file extensions corresponding to PDB files

  • PDBx_EXTENSIONS

    list of file extensions corresponding to PDBx/mmCIF files

Functions

pbxplore.structure.chains_from_files(path_list)[source]
pbxplore.structure.chains_from_trajectory(trajectory, topology)[source]

Objects

class pbxplore.structure.structure.Chain[source]

Class to handle PDB chain

class pbxplore.structure.structure.Atom[source]

Class for atoms in PDB or PDBx/mmCIF format.

class pbxplore.structure.PDB.PDB(name)[source]

Class to read PDB files.

Exceptions

exception pbxplore.structure.structure.ChainError[source]

Exeption class for the Chain class

This is a really lazy class. Feel to improve.

exception pbxplore.structure.structure.AtomError[source]

Exeption class for the Atom class.

This is a really lazy class. Feel to improve.